Andrei OSTERMAN: search on Z-Library

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1

Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals

Linda Jeanguenin, Aurora Lara-Núñez, Dmitry A. Rodionov, Andrei L. Osterman, Nataliya Y. Komarova, Doris Rentsch, Jesse F. Gregory, Andrew D. Hanson

Journal:

Functional & Integrative Genomics

Year:

2012

Language:

english

File:

PDF, 449 KB

english, 2012

2

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || Design and Application of Genome-Scale Reconstructed Metabolic Models

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 270 KB

english, 2008

3

Human Melanoma Cell Need SIRT5 to Survive

Park, Jeongsoon, Chen, Karen, Park, Junbum, Pak, Maxine, Verhaegen, Monique, Fullen, Douglas, Scott, David, Osterman, Andrei, Wang, Min, Andea, Aleodor, Prichard, Antonia, Scolyer, Richard, Wilmott, J

Journal:

Free Radical Biology and Medicine

Year:

2016

Language:

english

File:

PDF, 273 KB

english, 2016

4

Identifying determinants of bacterial fitness in a model of human gut microbial succession

Feng, Lihui, Raman, Arjun S., Hibberd, Matthew C., Cheng, Jiye, Griffin, Nicholas W., Peng, Yangqing, Leyn, Semen A., Rodionov, Dmitry A., Osterman, Andrei L., Gordon, Jeffrey I.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

Language:

english

File:

PDF, 1.12 MB

english, 2020

5

B Vitamins and Their Role in Immune Regulation and Cancer

Peterson, Christine Tara, Rodionov, Dmitry A., Osterman, Andrei L., Peterson, Scott N.

Journal:

Year:

2020

File:

PDF, 1.66 MB

2020

6

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || Predicting Gene Essentiality Using Genome-Scale in Silico Models

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 326 KB

english, 2008

7

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || The Construction of Systematic In-Frame, Single-Gene Knockout Mutant Collection in Escherichia coli K-12

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 433 KB

english, 2008

8

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 ||

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 6.75 MB

english, 2008

9

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || Transposon-Based Strategies for the Identification of Essential Bacterial Genes

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 197 KB

english, 2008

10

Ligand Binding-Induced Conformational Changes in Riboflavin Kinase: Structural Basis for the Ordered Mechanism †,‡

Karthikeyan, Subramanian, Zhou, Qingxian, Osterman, Andrei L., Zhang, Hong

Journal:

Year:

2003

Language:

english

File:

PDF, 682 KB

english, 2003

11

Crystallization and preliminary X-ray studies of ornithine decarboxylase fromTrypanosoma brucei

Grishin, Nick V., Osterman, Andrei L., Goldsmith, Elizabeth J., Phillips, Margaret A.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 222 KB

english, 1996

12

Genomic variations on a CoA biosynthetic theme

Osterman, Andrei L

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 142 KB

english, 2009

13

Novel inositol catabolic pathway in Thermotoga maritima

Rodionova, Irina A., Leyn, Semen A., Burkart, Michael D., Boucher, Nathalie, Noll, Kenneth M., Osterman, Andrei L., Rodionov, Dmitry A.

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 977 KB

english, 2013

14

Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants

Jones, Roshonda B., Berger, Paige K., Plows, Jasmine F., Alderete, Tanya L., Millstein, Joshua, Fogel, Jennifer, Iablokov, Stanislav N., Rodionov, Dmitry A., Osterman, Andrei L., Bode, Lars, Goran, Mi

Journal:

Year:

2020

File:

PDF, 4.92 MB

2020

15

Structure and Mechanism of Homoserine Kinase: Prototype for the GHMP Kinase Superfamily

Tianjun Zhou, Matthew Daugherty, Nick V. Grishin, Andrei L. Osterman, Hong Zhang

Journal:

Year:

2000

Language:

english

File:

PDF, 1.39 MB

english, 2000

16

Protein Tyrosine Phosphatases in the Human Genome

Andres Alonso, Joanna Sasin, Nunzio Bottini, Ilan Friedberg, Iddo Friedberg, Andrei Osterman, Adam Godzik, Tony Hunter, Jack Dixon, Tomas Mustelin

Journal:

Year:

2004

Language:

english

File:

PDF, 432 KB

english, 2004

17

Mycobacterial Nicotinate Mononucleotide Adenylyltransferase

Rodionova, Irina A., Zuccola, Harmon J., Sorci, Leonardo, Aleshin, Alexander E., Kazanov, Marat D., Ma, Chen-Ting, Sergienko, Eduard, Rubin, Eric J., Locher, Christopher P., Osterman, Andrei L.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 4.53 MB

english, 2015

18

Targeting NAD Biosynthesis in Bacterial Pathogens: Structure-Based Development of Inhibitors of Nicotinate Mononucleotide Adenylyltransferase NadD

Leonardo Sorci, Yongping Pan, Yvonne Eyobo, Irina Rodionova, Nian Huang, Oleg Kurnasov, Shijun Zhong, Alexander D. MacKerell Jr., Hong Zhang, Andrei L. Osterman

Journal:

Chemistry & Biology

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

19

Polysaccharides utilization in human gut bacteriumBacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks

Ravcheev, Dmitry A, Godzik, Adam, Osterman, Andrei L, Rodionov, Dmitry A

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

20

Introduction: Advances in Genomics and Proteomics

Yates, John R., Osterman, Andrei L.

Journal:

Chemical Reviews

Year:

2007

Language:

english

File:

PDF, 86 KB

english, 2007

21

Carbon-13 Isotope Effect Studies of Trypanosoma brucei Ornithine Decarboxylase †

Swanson, Todd, Brooks, Harold B., Osterman, Andrei L., O'Leary, Marion H., Phillips, Margaret A.

Journal:

Year:

1998

Language:

english

File:

PDF, 63 KB

english, 1998

22

Bcl-2 and Bcl-XL Regulate Proinflammatory Caspase-1 Activation by Interaction with NALP1

Jean-Marie Bruey, Nathalie Bruey-Sedano, Frederic Luciano, Dayong Zhai, Ruchi Balpai, Chunyan Xu, Christina L. Kress, Beatrice Bailly-Maitre, Xiaoqing Li, Andrei Osterman, Shu-ichi Matsuzawa, Alexey V

Journal:

Year:

2007

Language:

english

File:

PDF, 1.27 MB

english, 2007

23

Structural Determinants of Limited Proteolysis

Kazanov, Marat D., Igarashi, Yoshinobu, Eroshkin, Alexey M., Cieplak, Piotr, Ratnikov, Boris, Zhang, Ying, Li, Zhanwen, Godzik, Adam, Osterman, Andrei L., Smith, Jeffrey W.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 3.84 MB

english, 2011

24

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || Comparative Approach to Analysis of Gene Essentiality

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 120 KB

english, 2008

25

S7.6 Glutamate exposure of cortical neurons evokes initial oxidation of NADPH in mitochondria followed by a delayed oxidation of NADH: Delayed redox and calcium deregulation

Akos A. Gerencser, Judit Doczi, Leonardo Sorci, Andrei Osterman, David G. Nicholls, Vera Adam-Vizi

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2008

Language:

english

File:

PDF, 74 KB

english, 2008

26

Predicting outcomes of steady-state13C isotope tracing experiments using Monte Carlo sampling

Jan Schellenberger, Daniel C Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A Scott, Jennifer L Reed, Andrei L Osterman, Bernhard ∅ Palsson

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.00 MB

english, 2012

27

Formation of Functional Cross-Species Heterodimers of Ornithine Decarboxylase

Osterman, Andrei, Grishin, Nick V., Kinch, Lisa N., Phillips, Margaret A.

Journal:

Year:

1994

Language:

english

File:

PDF, 767 KB

english, 1994

28

Structural Basis for the Catalysis and Substrate Specificity of Homoserine Kinase †

Krishna, S. Sri, Zhou, Tianjun, Daugherty, Matthew, Osterman, Andrei, Zhang, Hong

Journal:

Year:

2001

Language:

english

File:

PDF, 1.41 MB

english, 2001

29

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria

Rodionova, Irina A., Li, Xiaoqing, Thiel, Vera, Stolyar, Sergey, Stanton, Krista, Fredrickson, James K., Bryant, Donald A., Osterman, Andrei L., Best, Aaron A., Rodionov, Dmitry A.

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 2.48 MB

english, 2013

30

Tagaturonate–fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima

Irina A. Rodionova, David A. Scott, Nick V. Grishin, Andrei L. Osterman, Dmitry A. Rodionov

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 1.90 MB

english, 2012

31

Glutamine-fueled mitochondrial metabolism is decoupled from glycolysis in melanoma

Filipp, Fabian V., Ratnikov, Boris, De Ingeniis, Jessica, Smith, Jeffrey W., Osterman, Andrei L., Scott, David A.

Journal:

Pigment Cell & Melanoma Research

Year:

2012

Language:

english

File:

PDF, 7.21 MB

english, 2012

32

The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities

Zhang, Ying, Zagnitko, Olga, Rodionova, Irina, Osterman, Andrei, Godzik, Adam, Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 3.09 MB

english, 2011

33

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

Pinchuk, Grigoriy E., Hill, Eric A., Geydebrekht, Oleg V., De Ingeniis, Jessica, Zhang, Xiaolin, Osterman, Andrei, Scott, James H., Reed, Samantha B., Romine, Margaret F., Konopka, Allan E., Beliaev,

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 844 KB

english, 2010

34

Arginylation regulates purine nucleotide biosynthesis by enhancing the activity of phosphoribosyl pyrophosphate synthase

Zhang, Fangliang, Patel, Devang M., Colavita, Kristen, Rodionova, Irina, Buckley, Brian, Scott, David A., Kumar, Akhilesh, Shabalina, Svetlana A., Saha, Sougata, Chernov, Mikhail, Osterman, Andrei L.,

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.42 MB

english, 2015

35

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota

Hibberd, Matthew C., Wu, Meng, Rodionov, Dmitry A., Li, Xiaoqing, Cheng, Jiye, Griffin, Nicholas W., Barratt, Michael J., Giannone, Richard J., Hettich, Robert L., Osterman, Andrei L., Gordon, Jeffrey

Journal:

Science Translational Medicine

Year:

2017

Language:

english

File:

PDF, 934 KB

english, 2017

36

Combined Prebiotic and Microbial Intervention Improves Oral Cholera Vaccination Responses in a Mouse Model of Childhood Undernutrition

Di Luccia, Blanda, Ahern, Philip P., Griffin, Nicholas W., Cheng, Jiye, Guruge, Janaki L., Byrne, Alexandra E., Rodionov, Dmitry A., Leyn, Semen A., Osterman, Andrei L., Ahmed, Tahmeed, Colonna, Marco

Journal:

Cell Host & Microbe

Year:

2020

File:

PDF, 1.46 MB

2020

37

Aerobic tryptophan degradation pathway in bacteria: novel kynurenine formamidase

Oleg Kurnasov, Lynn Jablonski, Boris Polanuyer, Pieter Dorrestein, Tadhg Begley, Andrei Osterman

Journal:

FEMS Microbiology Letters

Year:

2003

Language:

english

File:

PDF, 371 KB

english, 2003

38

Role of Arg-277 in the Binding of Pyridoxal 5‘-Phosphate to Trypanosoma brucei Ornithine Decarboxylase †

Osterman, Andrei L., Brooks, Harold B., Rizo, Josep, Phillips, Margaret A.

Journal:

Year:

1997

Language:

english

File:

PDF, 253 KB

english, 1997

39

Structure and Lytic Activity of a Bacillus anthracis Prophage Endolysin

Low, Lieh Yoon, Yang, Chen, Perego, Marta, Osterman, Andrei, Liddington, Robert C.

Journal:

Journal of Biological Chemistry

Year:

2005

Language:

english

File:

PDF, 1.03 MB

english, 2005

40

Genomics-Guided Analysis of NAD Recycling Yields Functional Elucidation of COG1058 as a New Family of Pyrophosphatases

Cialabrini, Lucia, Ruggieri, Silverio, Kazanov, Marat D., Sorci, Leonardo, Mazzola, Francesca, Orsomando, Giuseppe, Osterman, Andrei L., Raffaelli, Nadia, Netto, Luis Eduardo Soares

Journal:

Year:

2013

Language:

english

File:

PDF, 2.65 MB

english, 2013

41

Targeting Metalloproteins by Fragment-Based Lead Discovery

Sherida Johnson, Elisa Barile, Biancamaria Farina, Angela Purves, Jun Wei, Li-Hsing Chen, Sergey Shiryaev, Ziming Zhang, Irina Rodionova, Arpita Agrawal, Seth M. Cohen, Andrei Osterman, Alex Strongin,

Journal:

Chemical Biology & Drug Design

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

42

Reverse TCA cycle flux through isocitrate dehydrogenases 1 and 2 is required for lipogenesis in hypoxic melanoma cells

Fabian V. Filipp, David A. Scott, Ze’ev A. Ronai, Andrei L. Osterman, Jeffrey W. Smith

Journal:

Pigment Cell & Melanoma Research

Year:

2012

Language:

english

File:

PDF, 7.49 MB

english, 2012

43

[Methods in Molecular Biology™] Microbial Gene Essentiality: Protocols and Bioinformatics Volume 416 || Identification and Analysis of Essential Genes in Haemophilus influenzae

Osterman, Andrei L., Gerdes, Svetlana Y.

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

44

Essential genes on metabolic maps

Svetlana Gerdes, Robert Edwards, Michael Kubal, Michael Fonstein, Rick Stevens, Andrei Osterman

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 560 KB

english, 2006

45

Crystal Structures of E. coli Nicotinate Mononucleotide Adenylyltransferase and Its Complex with Deamido-NAD

Hong Zhang, Tianjun Zhou, Oleg Kurnasov, Sara Cheek, Nick V Grishin, Andrei Osterman

Journal:

Year:

2002

Language:

english

File:

PDF, 954 KB

english, 2002

46

Biogenesis and Homeostasis of Nicotinamide Adenine Dinucleotide Cofactor

Osterman, Andrei

Journal:

Year:

2009

Language:

english

File:

PDF, 2.39 MB

english, 2009

47

Central carbon metabolism in the progression of mammary carcinoma

Adam D. Richardson, Chen Yang, Andrei Osterman, Jeffrey W. Smith

Journal:

Breast Cancer Research and Treatment

Year:

2008

Language:

english

File:

PDF, 331 KB

english, 2008

48

Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris

Alexei TEPLYAKOV, Kostya POLYAKOV, Galya OBMOLOVA, Boris STROKOPYTOV, Inna KURANOVA, Andrei OSTERMAN, Nikolai GRISHIN, Sergei SMULEVITCH, Olga ZAGNITKO, Olga GALPERINA, Michael MATZ, Valentin STEPANOV

Journal:

Year:

1992

Language:

english

File:

PDF, 848 KB

english, 1992

49

Altering the Reaction Specificity of Eukaryotic Ornithine Decarboxylase †,‡

Jackson, Laurie K., Brooks, Harold B., Osterman, Andrei L., Goldsmith, Elizabeth J., Phillips, Margaret A.

Journal:

Year:

2000

Language:

english

File:

PDF, 672 KB

english, 2000

50

Ultrahigh-throughput functional profiling of microbiota communities

Terekhov, Stanislav S., Smirnov, Ivan V., Malakhova, Maja V., Samoilov, Andrei E., Manolov, Alexander I., Nazarov, Anton S., Danilov, Dmitry V., Dubiley, Svetlana A., Osterman, Ilya A., Rubtsova, Mari

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.82 MB

english, 2018

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